STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA97979.1Gamma-glutamylputrescine oxidase. (440 aa)    
Predicted Functional Partners:
SEA29754.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.971
SEA59030.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
 
 0.971
SEA97990.1
Amino acid/polyamine/organocation transporter, APC superfamily.
 
  
 0.872
SEA46761.1
L-glutamine synthetase.
 
 
  0.801
SEA89193.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.797
SDZ88902.1
Glutamate--putrescine ligase; Belongs to the glutamine synthetase family.
 
 
  0.790
SEA92306.1
Glutamate--putrescine ligase; Belongs to the glutamine synthetase family.
 
 
  0.770
SEA97968.1
Hypothetical protein.
  
    0.699
SDZ88856.1
Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.696
SDZ79277.1
Glycine/D-amino acid oxidase.
  
  
 
0.664
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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