STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB03431.1Protein of unknown function. (807 aa)    
Predicted Functional Partners:
SEB03418.1
Phosphate butyryltransferase.
 
 0.968
SEA58567.1
Phosphate acetyltransferase/phosphate butyryltransferase.
 
 0.829
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
 
  
 0.819
SEB03445.1
Enoyl-[acyl-carrier-protein] reductase [NADH].
 
    0.805
SEB03345.1
3-hydroxyacyl-CoA dehydrogenase.
    
  0.785
SEB03370.1
HD domain-containing protein.
       0.768
SEB03381.1
Acetate CoA/acetoacetate CoA-transferase beta subunit.
       0.768
SEB03392.1
Acetate CoA/acetoacetate CoA-transferase alpha subunit.
       0.768
SEB03358.1
3-hydroxybutyrate dehydrogenase.
  
 
  0.763
SEB03325.1
Hypothetical protein.
       0.735
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.