STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB08734.1Amino acid/amide ABC transporter substrate-binding protein, HAAT family. (376 aa)    
Predicted Functional Partners:
SEB08743.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
  
 0.939
SEB08754.1
Hypothetical protein.
 
    0.914
SDZ99110.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.900
SEA69179.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.900
SEB07887.1
ABC-2 type transport system permease protein.
 
   
 0.831
SEB07878.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.822
SEA83289.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
   
 
  0.814
SEA84831.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
   
 
  0.814
SDZ81338.1
40-residue YVTN family beta-propeller repeat-containing protein.
 
  
 0.809
SEA83216.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
  
 
  0.804
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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