AQU99605.1 protein (Desulfococcus multivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AQU99605.1

Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)

Predicted Functional Partners:

AQU99604.1

0.909

QrcB

0.793

PhsA

0.791

AQU99642.1

0.754

AQU99535.2

0.750

AQV00512.1

0.750

MopA

0.712

AQV00919.1

0.711

AQU99462.1

0.708

FadR1

0.689

Your Current Organism:

Desulfococcus multivorans

NCBI taxonomy Id: 897
Other names: ATCC 33890, D. multivorans, DSM 2059, strain 1be1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQU99462.1	AQU99604.1	B2D07_00810	B2D07_01595	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AQU99462.1	AQU99605.1	B2D07_00810	B2D07_01600	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
AQU99462.1	MopA	B2D07_00810	B2D07_12790	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.429
AQU99535.2	AQU99604.1	B2D07_01210	B2D07_01595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AQU99535.2	AQU99605.1	B2D07_01210	B2D07_01600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AQU99535.2	AQV00919.1	B2D07_01210	B2D07_09180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AQU99535.2	MopA	B2D07_01210	B2D07_12790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.646
AQU99604.1	AQU99462.1	B2D07_01595	B2D07_00810	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AQU99604.1	AQU99535.2	B2D07_01595	B2D07_01210	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.541
AQU99604.1	AQU99605.1	B2D07_01595	B2D07_01600	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AQU99604.1	AQU99642.1	B2D07_01595	B2D07_01825	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
AQU99604.1	AQV00512.1	B2D07_01595	B2D07_06825	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.541
AQU99604.1	AQV00919.1	B2D07_01595	B2D07_09180	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AQU99604.1	FadR1	B2D07_01595	B2D07_01605	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AQU99604.1	MopA	B2D07_01595	B2D07_12790	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.712
AQU99604.1	PhsA	B2D07_01595	B2D07_01325	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiosulfate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.541
AQU99604.1	QrcB	B2D07_01595	B2D07_17280	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.541
AQU99605.1	AQU99462.1	B2D07_01600	B2D07_00810	Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
AQU99605.1	AQU99535.2	B2D07_01600	B2D07_01210	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.750
AQU99605.1	AQU99604.1	B2D07_01600	B2D07_01595	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxylamine oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909