STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LysS1EF-P lysine aminoacylase GenX; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)    
Predicted Functional Partners:
AQU99600.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.898
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
 
 
 0.861
AQV01348.1
Elongation factor P-like protein YeiP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the elongation factor P family.
   
 
 0.804
HdaH
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
AQV02840.1
Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
KamA
Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.591
KamA-2
Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.519
AapJ
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
AQU99987.1
KamA family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.476
Your Current Organism:
Desulfococcus multivorans
NCBI taxonomy Id: 897
Other names: ATCC 33890, D. multivorans, DSM 2059, strain 1be1
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