STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VrlHGamma-glutamylcyclotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)    
Predicted Functional Partners:
VrlG
Glucosamine 6-phosphate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.935
VrlF
DUF5049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
VrlE
Amidoligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.779
VrlI
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
VrlJ
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
VrlK
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.496
VrlL
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.446
Your Current Organism:
Desulfococcus multivorans
NCBI taxonomy Id: 897
Other names: ATCC 33890, D. multivorans, DSM 2059, strain 1be1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.