Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQV00099.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
AQV00098.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
AQV00097.1
Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
AQV01814.1
Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.995
Ttg
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
AQV00519.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.919
AQV00518.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.826
VacJ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.766
RbsV
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.753
RsbV
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.753
AQV01976.1
LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.627
Your Current Organism:
Desulfococcus multivorans
NCBI taxonomy Id: 897
Other names: ATCC 33890, D. multivorans, DSM 2059, strain 1be1
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