Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AQV00208.1 | AcnA | B2D07_05090 | B2D07_05085 | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.437 |
AQV00208.1 | HemE | B2D07_05090 | B2D07_01185 | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the uroporphyrinogen decarboxylase family. | 0.513 |
AQV00208.1 | Tkt | B2D07_05090 | B2D07_05095 | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family. | 0.509 |
AcnA | AQV00208.1 | B2D07_05085 | B2D07_05090 | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.437 |
AcnA | Tkt | B2D07_05085 | B2D07_05095 | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family. | 0.731 |
HemE | AQV00208.1 | B2D07_01185 | B2D07_05090 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the uroporphyrinogen decarboxylase family. | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.513 |
Tkt | AQV00208.1 | B2D07_05095 | B2D07_05090 | Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family. | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.509 |
Tkt | AcnA | B2D07_05095 | B2D07_05085 | Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.731 |