STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQV00343.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)    
Predicted Functional Partners:
AQV02903.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.923
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.763
NagZ
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.630
MreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
     0.622
MreB
Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.581
DacC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.567
MreD
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.545
MrdA
Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.542
AQV01506.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.533
AQU99971.1
Dipeptide epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.472
Your Current Organism:
Desulfococcus multivorans
NCBI taxonomy Id: 897
Other names: ATCC 33890, D. multivorans, DSM 2059, strain 1be1
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