Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDW15533.1 | SDW15561.1 | SAMN04489725_102204 | SAMN04489725_102205 | Metal-sulfur cluster biosynthetic enzyme. | Hypothetical protein. | 0.784 |
SDW15533.1 | SDW15585.1 | SAMN04489725_102204 | SAMN04489725_102206 | Metal-sulfur cluster biosynthetic enzyme. | Uncharacterized conserved protein. | 0.752 |
SDW15533.1 | SDW15608.1 | SAMN04489725_102204 | SAMN04489725_102207 | Metal-sulfur cluster biosynthetic enzyme. | Uncharacterized conserved protein, DUF2249 family. | 0.671 |
SDW15533.1 | SDW15638.1 | SAMN04489725_102204 | SAMN04489725_102208 | Metal-sulfur cluster biosynthetic enzyme. | Uncharacterized conserved protein, DUF2249 family. | 0.469 |
SDW15533.1 | SDW21077.1 | SAMN04489725_102204 | SAMN04489725_10380 | Metal-sulfur cluster biosynthetic enzyme. | Nitrogen fixation protein NifU. | 0.538 |
SDW15533.1 | SDW21138.1 | SAMN04489725_102204 | SAMN04489725_10382 | Metal-sulfur cluster biosynthetic enzyme. | Iron-regulated ABC transporter permease protein SufD. | 0.506 |
SDW15533.1 | SDW21164.1 | SAMN04489725_102204 | SAMN04489725_10383 | Metal-sulfur cluster biosynthetic enzyme. | Fe-S cluster assembly ATP-binding protein. | 0.619 |
SDW15533.1 | SDW32831.1 | SAMN04489725_102204 | SAMN04489725_104145 | Metal-sulfur cluster biosynthetic enzyme. | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.531 |
SDW15533.1 | SDW34170.1 | SAMN04489725_102204 | SAMN04489725_104199 | Metal-sulfur cluster biosynthetic enzyme. | Uncharacterized domain 1-containing protein. | 0.512 |
SDW15533.1 | hmp | SAMN04489725_102204 | SAMN04489725_101192 | Metal-sulfur cluster biosynthetic enzyme. | Nitric oxide dioxygenase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily. | 0.480 |
SDW15561.1 | SDW15533.1 | SAMN04489725_102205 | SAMN04489725_102204 | Hypothetical protein. | Metal-sulfur cluster biosynthetic enzyme. | 0.784 |
SDW15561.1 | SDW15585.1 | SAMN04489725_102205 | SAMN04489725_102206 | Hypothetical protein. | Uncharacterized conserved protein. | 0.937 |
SDW15561.1 | SDW15608.1 | SAMN04489725_102205 | SAMN04489725_102207 | Hypothetical protein. | Uncharacterized conserved protein, DUF2249 family. | 0.904 |
SDW15561.1 | SDW15638.1 | SAMN04489725_102205 | SAMN04489725_102208 | Hypothetical protein. | Uncharacterized conserved protein, DUF2249 family. | 0.845 |
SDW15585.1 | SDW15533.1 | SAMN04489725_102206 | SAMN04489725_102204 | Uncharacterized conserved protein. | Metal-sulfur cluster biosynthetic enzyme. | 0.752 |
SDW15585.1 | SDW15561.1 | SAMN04489725_102206 | SAMN04489725_102205 | Uncharacterized conserved protein. | Hypothetical protein. | 0.937 |
SDW15585.1 | SDW15608.1 | SAMN04489725_102206 | SAMN04489725_102207 | Uncharacterized conserved protein. | Uncharacterized conserved protein, DUF2249 family. | 0.938 |
SDW15585.1 | SDW15638.1 | SAMN04489725_102206 | SAMN04489725_102208 | Uncharacterized conserved protein. | Uncharacterized conserved protein, DUF2249 family. | 0.868 |
SDW15608.1 | SDW15533.1 | SAMN04489725_102207 | SAMN04489725_102204 | Uncharacterized conserved protein, DUF2249 family. | Metal-sulfur cluster biosynthetic enzyme. | 0.671 |
SDW15608.1 | SDW15561.1 | SAMN04489725_102207 | SAMN04489725_102205 | Uncharacterized conserved protein, DUF2249 family. | Hypothetical protein. | 0.904 |
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