Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDW94245.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
SDW94270.1
Hypothetical protein.
       0.762
SDW94320.1
Hypothetical protein.
       0.731
SDW94349.1
AAA-like domain-containing protein.
       0.731
SDW94371.1
Hypothetical protein.
       0.731
SDW94293.1
Hypothetical protein.
       0.731
SDW94397.1
Hypothetical protein.
       0.548
SDW94426.1
Hypothetical protein.
       0.548
SDW94219.1
Hypothetical protein.
       0.490
Your Current Organism:
Alicyclobacillus hesperidum
NCBI taxonomy Id: 89784
Other names: A. hesperidum, Alicyclobacillus hesperidum Albuquerque et al. 2000, DSM 12489, strain FR-11
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