Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APTX | LIG3 | ENSNMEP00000010803 | ENSNMEP00000017820 | Aprataxin isoform X1. | DNA ligase 3. | 0.635 |
APTX | POLB | ENSNMEP00000010803 | ENSNMEP00000023247 | Aprataxin isoform X1. | DNA polymerase beta. | 0.491 |
APTX | PRKDC | ENSNMEP00000010803 | ENSNMEP00000015186 | Aprataxin isoform X1. | DNA-dependent protein kinase catalytic subunit isoform X1. | 0.536 |
APTX | TDP1 | ENSNMEP00000010803 | ENSNMEP00000001956 | Aprataxin isoform X1. | Tyrosyl-DNA phosphodiesterase 1 isoform X1. | 0.808 |
APTX | TDP2 | ENSNMEP00000010803 | ENSNMEP00000005042 | Aprataxin isoform X1. | Tyrosyl-DNA phosphodiesterase 2. | 0.551 |
APTX | TOP1 | ENSNMEP00000010803 | ENSNMEP00000018263 | Aprataxin isoform X1. | DNA topoisomerase I. | 0.404 |
APTX | TOP1MT | ENSNMEP00000010803 | ENSNMEP00000010856 | Aprataxin isoform X1. | DNA topoisomerase I, mitochondrial isoform X1. | 0.404 |
APTX | XRCC5 | ENSNMEP00000010803 | ENSNMEP00000027382 | Aprataxin isoform X1. | X-ray repair cross-complementing protein 5. | 0.556 |
APTX | XRCC6 | ENSNMEP00000010803 | ENSNMEP00000012197 | Aprataxin isoform X1. | X-ray repair cross complementing 6. | 0.577 |
ERCC4 | TDP1 | ENSNMEP00000005924 | ENSNMEP00000001956 | DNA excision repair protein ERCC-4. | Tyrosyl-DNA phosphodiesterase 1 isoform X1. | 0.768 |
ERCC4 | TOP1 | ENSNMEP00000005924 | ENSNMEP00000018263 | DNA excision repair protein ERCC-4. | DNA topoisomerase I. | 0.456 |
ERCC4 | TOP1MT | ENSNMEP00000005924 | ENSNMEP00000010856 | DNA excision repair protein ERCC-4. | DNA topoisomerase I, mitochondrial isoform X1. | 0.456 |
ERCC4 | XRCC5 | ENSNMEP00000005924 | ENSNMEP00000027382 | DNA excision repair protein ERCC-4. | X-ray repair cross-complementing protein 5. | 0.544 |
ERCC4 | XRCC6 | ENSNMEP00000005924 | ENSNMEP00000012197 | DNA excision repair protein ERCC-4. | X-ray repair cross complementing 6. | 0.530 |
LIG3 | APTX | ENSNMEP00000017820 | ENSNMEP00000010803 | DNA ligase 3. | Aprataxin isoform X1. | 0.635 |
LIG3 | POLB | ENSNMEP00000017820 | ENSNMEP00000023247 | DNA ligase 3. | DNA polymerase beta. | 0.955 |
LIG3 | PRKDC | ENSNMEP00000017820 | ENSNMEP00000015186 | DNA ligase 3. | DNA-dependent protein kinase catalytic subunit isoform X1. | 0.683 |
LIG3 | TDP1 | ENSNMEP00000017820 | ENSNMEP00000001956 | DNA ligase 3. | Tyrosyl-DNA phosphodiesterase 1 isoform X1. | 0.776 |
LIG3 | TOP1 | ENSNMEP00000017820 | ENSNMEP00000018263 | DNA ligase 3. | DNA topoisomerase I. | 0.414 |
LIG3 | XRCC5 | ENSNMEP00000017820 | ENSNMEP00000027382 | DNA ligase 3. | X-ray repair cross-complementing protein 5. | 0.918 |
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