STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP54Inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1. (1733 aa)    
Predicted Functional Partners:
PAN2
PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1.
      
 0.760
USPL1
SUMO-specific isopeptidase USPL1 isoform X1.
      
 0.618
ZRANB1
Ubiquitin thioesterase ZRANB1.
      
 0.607
KLHL7
Kelch-like protein 7.
   
  
 0.578
USP20
Ubiquitin carboxyl-terminal hydrolase 20 isoform X1.
      
 0.577
USP48
Ubiquitin carboxyl-terminal hydrolase 48 isoform X1.
      
 0.576
USP37
Ubiquitin carboxyl-terminal hydrolase 26/29/37.
   
  
 0.576
USP46
Ubiquitin carboxyl-terminal hydrolase 46 isoform X1.
      
 0.559
JOSD1
Josephin-1.
      
 0.551
OTUD7B
OTU domain-containing protein 7B.
      
 0.547
Your Current Organism:
Numida meleagris
NCBI taxonomy Id: 8996
Other names: N. meleagris, helmeted guineafowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.