VIM protein (Numida meleagris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VIM

Vimentin. (460 aa)

Predicted Functional Partners:

TCAP

0.629

CASP7

0.620

ENSNMEP00000002845

0.603

ENSNMEP00000003299

0.603

ENSNMEP00000027122

0.603

CASP6

0.599

ENSNMEP00000025640

0.592

ENSNMEP00000025649

0.592

GFAP

0.543

ZEB1

0.540

Your Current Organism:

Numida meleagris

NCBI taxonomy Id: 8996
Other names: N. meleagris, helmeted guineafowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP6	VIM	ENSNMEP00000006448	ENSNMEP00000014803	Caspase 6.	Vimentin.	0.599
CASP7	VIM	ENSNMEP00000014540	ENSNMEP00000014803	Caspase 7.	Vimentin.	0.620
ENSNMEP00000002845	VIM	ENSNMEP00000002845	ENSNMEP00000014803	annotation not available	Vimentin.	0.603
ENSNMEP00000003299	VIM	ENSNMEP00000003299	ENSNMEP00000014803	annotation not available	Vimentin.	0.603
ENSNMEP00000025640	VIM	ENSNMEP00000025640	ENSNMEP00000014803	annotation not available	Vimentin.	0.592
ENSNMEP00000025649	VIM	ENSNMEP00000025649	ENSNMEP00000014803	annotation not available	Vimentin.	0.592
ENSNMEP00000027122	VIM	ENSNMEP00000027122	ENSNMEP00000014803	Class II histocompatibility antigen, B-L beta chain-like.	Vimentin.	0.603
GFAP	TCAP	ENSNMEP00000003814	ENSNMEP00000006610	Glial fibrillary acidic protein.	Telethonin.	0.440
GFAP	VIM	ENSNMEP00000003814	ENSNMEP00000014803	Glial fibrillary acidic protein.	Vimentin.	0.543
TCAP	GFAP	ENSNMEP00000006610	ENSNMEP00000003814	Telethonin.	Glial fibrillary acidic protein.	0.440
TCAP	VIM	ENSNMEP00000006610	ENSNMEP00000014803	Telethonin.	Vimentin.	0.629
VIM	CASP6	ENSNMEP00000014803	ENSNMEP00000006448	Vimentin.	Caspase 6.	0.599
VIM	CASP7	ENSNMEP00000014803	ENSNMEP00000014540	Vimentin.	Caspase 7.	0.620
VIM	ENSNMEP00000002845	ENSNMEP00000014803	ENSNMEP00000002845	Vimentin.	annotation not available	0.603
VIM	ENSNMEP00000003299	ENSNMEP00000014803	ENSNMEP00000003299	Vimentin.	annotation not available	0.603
VIM	ENSNMEP00000025640	ENSNMEP00000014803	ENSNMEP00000025640	Vimentin.	annotation not available	0.592
VIM	ENSNMEP00000025649	ENSNMEP00000014803	ENSNMEP00000025649	Vimentin.	annotation not available	0.592
VIM	ENSNMEP00000027122	ENSNMEP00000014803	ENSNMEP00000027122	Vimentin.	Class II histocompatibility antigen, B-L beta chain-like.	0.603
VIM	GFAP	ENSNMEP00000014803	ENSNMEP00000003814	Vimentin.	Glial fibrillary acidic protein.	0.543
VIM	TCAP	ENSNMEP00000014803	ENSNMEP00000006610	Vimentin.	Telethonin.	0.629