STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIG4DNA ligase 4. (923 aa)    
Predicted Functional Partners:
XRCC6
X-ray repair cross complementing 6.
   
 0.996
PRKDC
DNA-dependent protein kinase catalytic subunit isoform X1.
   
 0.987
XRCC5
X-ray repair cross-complementing protein 5.
   
 0.977
PCNA
Proliferating cell nuclear antigen.
   
 0.962
NHEJ1
Non-homologous end-joining factor 1 isoform X1.
    
 0.960
XRCC1
DNA repair protein XRCC1.
   
 0.928
RAD52
DNA repair protein RAD52 homolog isoform X1.
    
 
 0.878
DCLRE1C
DNA cross-link repair 1C protein.
  
 0.857
XRCC4
X-ray repair cross complementing 4.
    
 0.852
CNPPD1
Protein CNPPD1.
    
 0.839
Your Current Organism:
Numida meleagris
NCBI taxonomy Id: 8996
Other names: N. meleagris, helmeted guineafowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.