STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RP9Retinitis pigmentosa 9 protein. (228 aa)    
Predicted Functional Partners:
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
      
 0.760
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.755
PRPF6
Pre-mRNA-processing factor 6.
      
 0.722
DHX38
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16.
   
 
 0.702
SNW1
SNW domain containing 1.
   
 
 0.663
CWC25
Pre-mRNA-splicing factor CWC25 homolog.
   
 
 0.646
MAK
Serine/threonine-protein kinase MAK isoform X1.
      
 0.620
LOC110387122
Saposin-C-like.
      
 0.618
PRPF4
U4/U6 small nuclear ribonucleoprotein PRP4.
      
 0.604
NKAP
NF-kappa-B-activating protein.
   
 
 0.580
Your Current Organism:
Numida meleagris
NCBI taxonomy Id: 8996
Other names: N. meleagris, helmeted guineafowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.