STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF8Protein SCAF8 isoform X1. (1364 aa)    
Predicted Functional Partners:
SETX
Probable helicase senataxin.
   
 
 0.899
ENSNMEP00000003361
annotation not available
   
 
 0.811
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11 isoform X1.
   
 
 0.757
TRANK1
TPR and ankyrin repeat-containing protein 1 isoform X1.
   
 
 0.697
RPAP2
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1.
    
 
 0.639
RNMT
MRNA cap guanine-N7 methyltransferase.
   
 
 0.622
NCBP1
Nuclear cap-binding protein subunit 1.
   
 
 0.607
EXOSC10
Exosome component 10.
   
 
 0.588
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
   
 
 0.575
TENT4A
Non-canonical poly(A) RNA polymerase PAPD7 isoform X1.
    
 
 0.573
Your Current Organism:
Numida meleagris
NCBI taxonomy Id: 8996
Other names: N. meleagris, helmeted guineafowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.