Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ASZ78_012115Uncharacterized protein. (54 aa)    
Predicted Functional Partners:
ASZ78_015402
LisH domain-containing protein.
   
 
 0.554
ASZ78_005934
Small ubiquitin-related modifier.
    
  0.506
ASZ78_002649
Uncharacterized protein.
    
 0.492
ASZ78_001146
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 
 0.490
ASZ78_001144
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 
 0.490
ASZ78_002268
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.489
ASZ78_003835
Uncharacterized protein.
    
 0.487
ASZ78_003468
Uncharacterized protein.
    
 0.473
ASZ78_007247
Uncharacterized protein.
    
   0.462
ASZ78_014706
UBR-type domain-containing protein.
      
 0.460
Your Current Organism:
Callipepla squamata
NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail
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