ASZ78_007941 protein (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASZ78_007941

Uncharacterized protein. (316 aa)

Predicted Functional Partners:

ASZ78_013747

0.996

ASZ78_000285

0.992

ASZ78_012503

0.990

ASZ78_014846

0.986

ASZ78_002223

0.980

ASZ78_011844

0.975

ASZ78_014470

0.974

ASZ78_008387

0.974

ASZ78_013278

0.971

RPS3A

0.970

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000285	ASZ78_002223	A0A226MHR1	A0A226NN21	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.996
ASZ78_000285	ASZ78_007941	A0A226MHR1	A0A226MLB5	Uncharacterized protein.	Uncharacterized protein.	0.992
ASZ78_000285	ASZ78_008387	A0A226MHR1	A0A226NBW9	Uncharacterized protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.999
ASZ78_000285	ASZ78_011844	A0A226MHR1	A0A226MIL7	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.994
ASZ78_000285	ASZ78_012503	A0A226MHR1	A0A226MS64	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.999
ASZ78_000285	ASZ78_013278	A0A226MHR1	A0A226N863	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.996
ASZ78_000285	ASZ78_013747	A0A226MHR1	A0A226MAD1	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.995
ASZ78_000285	ASZ78_014470	A0A226MHR1	A0A226N4F0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.960
ASZ78_000285	ASZ78_014846	A0A226MHR1	A0A226MRF8	Uncharacterized protein.	Uncharacterized protein.	0.999
ASZ78_000285	RPS3A	A0A226MHR1	A0A226MV60	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.989
ASZ78_002223	ASZ78_000285	A0A226NN21	A0A226MHR1	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.996
ASZ78_002223	ASZ78_007941	A0A226NN21	A0A226MLB5	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.980
ASZ78_002223	ASZ78_008387	A0A226NN21	A0A226NBW9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.986
ASZ78_002223	ASZ78_011844	A0A226NN21	A0A226MIL7	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
ASZ78_002223	ASZ78_012503	A0A226NN21	A0A226MS64	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Bms1-type G domain-containing protein.	0.987
ASZ78_002223	ASZ78_013278	A0A226NN21	A0A226N863	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
ASZ78_002223	ASZ78_013747	A0A226NN21	A0A226MAD1	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ASZ78_002223	ASZ78_014470	A0A226NN21	A0A226N4F0	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
ASZ78_002223	ASZ78_014846	A0A226NN21	A0A226MRF8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.996
ASZ78_002223	RPS3A	A0A226NN21	A0A226MV60	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999