STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASZ78_011711Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (488 aa)    
Predicted Functional Partners:
ASZ78_009186
TRUD domain-containing protein.
   
 
 0.953
ASZ78_001290
Uncharacterized protein.
  
 
 0.859
ASZ78_002880
SpoU_sub_bind domain-containing protein.
  
 
 0.842
ASZ78_009648
TRUD domain-containing protein.
   
 
 0.837
ASZ78_002255
Uncharacterized protein.
  
 
 0.820
ASZ78_014494
G domain-containing protein.
   
 
 0.817
ASZ78_009616
TruB_N domain-containing protein.
  
 
 0.813
ASZ78_010078
Uncharacterized protein.
   
   0.809
ASZ78_008959
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.809
ASZ78_013073
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.809
Your Current Organism:
Callipepla squamata
NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail
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