ASZ78_007266 protein (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASZ78_007266

PH domain-containing protein. (129 aa)

Predicted Functional Partners:

ASZ78_009611

0.886

ASZ78_005037

0.787

ASZ78_007267

0.763

ASZ78_007265

0.747

ASZ78_007263

0.686

ASZ78_007264

0.664

ASZ78_005137

0.604

ASZ78_000900

0.578

ASZ78_000903

0.578

ASZ78_011859

0.578

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000900	ASZ78_000903	A0A226ML65	A0A226MLL0	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_000900	ASZ78_007263	A0A226ML65	A0A226MMM4	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000900	ASZ78_007264	A0A226ML65	A0A226MMN3	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000900	ASZ78_007265	A0A226ML65	A0A226MMP2	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000900	ASZ78_007266	A0A226ML65	A0A226MMK6	Uncharacterized protein.	PH domain-containing protein.	0.578
ASZ78_000900	ASZ78_007267	A0A226ML65	A0A226MMP0	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000900	ASZ78_009611	A0A226ML65	A0A226NMZ6	Uncharacterized protein.	Uncharacterized protein.	0.619
ASZ78_000903	ASZ78_000900	A0A226MLL0	A0A226ML65	Uncharacterized protein.	Uncharacterized protein.	0.899
ASZ78_000903	ASZ78_007263	A0A226MLL0	A0A226MMM4	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000903	ASZ78_007264	A0A226MLL0	A0A226MMN3	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000903	ASZ78_007265	A0A226MLL0	A0A226MMP2	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000903	ASZ78_007266	A0A226MLL0	A0A226MMK6	Uncharacterized protein.	PH domain-containing protein.	0.578
ASZ78_000903	ASZ78_007267	A0A226MLL0	A0A226MMP0	Uncharacterized protein.	Uncharacterized protein.	0.578
ASZ78_000903	ASZ78_009611	A0A226MLL0	A0A226NMZ6	Uncharacterized protein.	Uncharacterized protein.	0.619
ASZ78_005037	ASZ78_007263	A0A226NDK1	A0A226MMM4	Uncharacterized protein.	Uncharacterized protein.	0.787
ASZ78_005037	ASZ78_007264	A0A226NDK1	A0A226MMN3	Uncharacterized protein.	Uncharacterized protein.	0.787
ASZ78_005037	ASZ78_007265	A0A226NDK1	A0A226MMP2	Uncharacterized protein.	Uncharacterized protein.	0.787
ASZ78_005037	ASZ78_007266	A0A226NDK1	A0A226MMK6	Uncharacterized protein.	PH domain-containing protein.	0.787
ASZ78_005037	ASZ78_007267	A0A226NDK1	A0A226MMP0	Uncharacterized protein.	Uncharacterized protein.	0.787
ASZ78_005137	ASZ78_007263	A0A226MK60	A0A226MMM4	Uncharacterized protein.	Uncharacterized protein.	0.604