ASZ78_007611 protein (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASZ78_007611

Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (551 aa)

Predicted Functional Partners:

ASZ78_013863

0.998

ASZ78_014312

0.976

ASZ78_007399

0.964

ASZ78_004264

0.962

ASZ78_002193

0.960

ASZ78_012200

0.958

ASZ78_007019

0.953

ASZ78_013144

0.949

ASZ78_015863

0.949

ASZ78_003290

0.936

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_002193	ASZ78_003290	A0A226NMZ5	A0A226NLD1	SHMT domain-containing protein.	ACT domain-containing protein.	0.947
ASZ78_002193	ASZ78_004264	A0A226NMZ5	A0A226NFE7	SHMT domain-containing protein.	Hcy-binding domain-containing protein; Involved in the regulation of homocysteine metabolism.	0.885
ASZ78_002193	ASZ78_007019	A0A226NMZ5	A0A226MQT0	SHMT domain-containing protein.	Uncharacterized protein.	0.982
ASZ78_002193	ASZ78_007399	A0A226NMZ5	A0A226MV97	SHMT domain-containing protein.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.961
ASZ78_002193	ASZ78_007611	A0A226NMZ5	A0A226MTJ3	SHMT domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.960
ASZ78_002193	ASZ78_012200	A0A226NMZ5	A0A226MUD5	SHMT domain-containing protein.	AdoHcyase_NAD domain-containing protein.	0.665
ASZ78_002193	ASZ78_013144	A0A226NMZ5	A0A226MLA9	SHMT domain-containing protein.	AdoHcyase_NAD domain-containing protein.	0.632
ASZ78_002193	ASZ78_013863	A0A226NMZ5	A0A226NGD4	SHMT domain-containing protein.	Uncharacterized protein.	0.874
ASZ78_002193	ASZ78_014312	A0A226NMZ5	A0A226MNB2	SHMT domain-containing protein.	PALP domain-containing protein.	0.979
ASZ78_002193	ASZ78_015863	A0A226NMZ5	A0A226NII0	SHMT domain-containing protein.	AdoHcyase_NAD domain-containing protein.	0.632
ASZ78_003290	ASZ78_002193	A0A226NLD1	A0A226NMZ5	ACT domain-containing protein.	SHMT domain-containing protein.	0.947
ASZ78_003290	ASZ78_004264	A0A226NLD1	A0A226NFE7	ACT domain-containing protein.	Hcy-binding domain-containing protein; Involved in the regulation of homocysteine metabolism.	0.944
ASZ78_003290	ASZ78_007019	A0A226NLD1	A0A226MQT0	ACT domain-containing protein.	Uncharacterized protein.	0.948
ASZ78_003290	ASZ78_007399	A0A226NLD1	A0A226MV97	ACT domain-containing protein.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.944
ASZ78_003290	ASZ78_007611	A0A226NLD1	A0A226MTJ3	ACT domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.936
ASZ78_003290	ASZ78_012200	A0A226NLD1	A0A226MUD5	ACT domain-containing protein.	AdoHcyase_NAD domain-containing protein.	0.926
ASZ78_003290	ASZ78_013144	A0A226NLD1	A0A226MLA9	ACT domain-containing protein.	AdoHcyase_NAD domain-containing protein.	0.921
ASZ78_003290	ASZ78_013863	A0A226NLD1	A0A226NGD4	ACT domain-containing protein.	Uncharacterized protein.	0.953
ASZ78_003290	ASZ78_014312	A0A226NLD1	A0A226MNB2	ACT domain-containing protein.	PALP domain-containing protein.	0.972
ASZ78_003290	ASZ78_015863	A0A226NLD1	A0A226NII0	ACT domain-containing protein.	AdoHcyase_NAD domain-containing protein.	0.921