ASZ78_008098 protein (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASZ78_008098

Uncharacterized protein. (494 aa)

Predicted Functional Partners:

ASZ78_000789

0.759

ASZ78_007773

0.737

ASZ78_010473

0.727

ASZ78_013652

0.726

ASZ78_008208

0.718

ASZ78_001352

0.700

ASZ78_009177

0.695

ASZ78_016318

0.695

ASZ78_011224

0.673

ASZ78_003792

0.654

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_000789	ASZ78_001352	A0A226MZ71	A0A226N2P6	Glyceraldehyde-3-phosphate dehydrogenase.	Suf domain-containing protein.	0.878
ASZ78_000789	ASZ78_007773	A0A226MZ71	A0A226MSW6	Glyceraldehyde-3-phosphate dehydrogenase.	Thymidylat_synt domain-containing protein.	0.493
ASZ78_000789	ASZ78_008098	A0A226MZ71	A0A226MXK0	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.759
ASZ78_000789	ASZ78_011224	A0A226MZ71	A0A226ME63	Glyceraldehyde-3-phosphate dehydrogenase.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.445
ASZ78_000789	ASZ78_013652	A0A226MZ71	A0A226N1G7	Glyceraldehyde-3-phosphate dehydrogenase.	Thymidine kinase.	0.500
ASZ78_000789	ASZ78_016318	A0A226MZ71	A0A226MT10	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.759
ASZ78_001352	ASZ78_000789	A0A226N2P6	A0A226MZ71	Suf domain-containing protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.878
ASZ78_001352	ASZ78_007773	A0A226N2P6	A0A226MSW6	Suf domain-containing protein.	Thymidylat_synt domain-containing protein.	0.499
ASZ78_001352	ASZ78_008098	A0A226N2P6	A0A226MXK0	Suf domain-containing protein.	Uncharacterized protein.	0.700
ASZ78_001352	ASZ78_013652	A0A226N2P6	A0A226N1G7	Suf domain-containing protein.	Thymidine kinase.	0.581
ASZ78_001352	ASZ78_016318	A0A226N2P6	A0A226MT10	Suf domain-containing protein.	Uncharacterized protein.	0.700
ASZ78_003792	ASZ78_007773	A0A226N1V6	A0A226MSW6	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Thymidylat_synt domain-containing protein.	0.932
ASZ78_003792	ASZ78_008098	A0A226N1V6	A0A226MXK0	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Uncharacterized protein.	0.654
ASZ78_003792	ASZ78_013652	A0A226N1V6	A0A226N1G7	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Thymidine kinase.	0.929
ASZ78_003792	ASZ78_016318	A0A226N1V6	A0A226MT10	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Uncharacterized protein.	0.654
ASZ78_007773	ASZ78_000789	A0A226MSW6	A0A226MZ71	Thymidylat_synt domain-containing protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.493
ASZ78_007773	ASZ78_001352	A0A226MSW6	A0A226N2P6	Thymidylat_synt domain-containing protein.	Suf domain-containing protein.	0.499
ASZ78_007773	ASZ78_003792	A0A226MSW6	A0A226N1V6	Thymidylat_synt domain-containing protein.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.932
ASZ78_007773	ASZ78_008098	A0A226MSW6	A0A226MXK0	Thymidylat_synt domain-containing protein.	Uncharacterized protein.	0.737
ASZ78_007773	ASZ78_011224	A0A226MSW6	A0A226ME63	Thymidylat_synt domain-containing protein.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.952