ASZ78_010398 protein (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASZ78_010398

Protein kinase domain-containing protein. (109 aa)

Predicted Functional Partners:

ASZ78_011824

0.979

ASZ78_013227

0.976

ASZ78_009407

0.948

ASZ78_004769

0.939

ASZ78_006753

0.937

ASZ78_006428

0.936

ASZ78_015686

0.914

ASZ78_013758

0.913

ASZ78_015382

0.911

ASZ78_008138

0.899

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_004769	ASZ78_006428	A0A226MU66	A0A226MLR6	Ig-like domain-containing protein.	Uncharacterized protein.	0.839
ASZ78_004769	ASZ78_006753	A0A226MU66	A0A226MHE0	Ig-like domain-containing protein.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.784
ASZ78_004769	ASZ78_008138	A0A226MU66	A0A226N5C1	Ig-like domain-containing protein.	Tyrosine-protein kinase receptor.	0.467
ASZ78_004769	ASZ78_009407	A0A226MU66	A0A226MY86	Ig-like domain-containing protein.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.809
ASZ78_004769	ASZ78_010398	A0A226MU66	A0A226NB21	Ig-like domain-containing protein.	Protein kinase domain-containing protein.	0.939
ASZ78_004769	ASZ78_011824	A0A226MU66	A0A226MQ96	Ig-like domain-containing protein.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.889
ASZ78_004769	ASZ78_013227	A0A226MU66	A0A226MD35	Ig-like domain-containing protein.	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.	0.900
ASZ78_004769	ASZ78_013758	A0A226MU66	A0A226MMR5	Ig-like domain-containing protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.629
ASZ78_004769	ASZ78_015382	A0A226MU66	A0A226MFU5	Ig-like domain-containing protein.	Uncharacterized protein.	0.874
ASZ78_004769	ASZ78_015686	A0A226MU66	A0A226NN79	Ig-like domain-containing protein.	IRS-type PTB domain-containing protein.	0.852
ASZ78_006428	ASZ78_004769	A0A226MLR6	A0A226MU66	Uncharacterized protein.	Ig-like domain-containing protein.	0.839
ASZ78_006428	ASZ78_008138	A0A226MLR6	A0A226N5C1	Uncharacterized protein.	Tyrosine-protein kinase receptor.	0.936
ASZ78_006428	ASZ78_010398	A0A226MLR6	A0A226NB21	Uncharacterized protein.	Protein kinase domain-containing protein.	0.936
ASZ78_006428	ASZ78_011824	A0A226MLR6	A0A226MQ96	Uncharacterized protein.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.640
ASZ78_006428	ASZ78_013758	A0A226MLR6	A0A226MMR5	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.575
ASZ78_006428	ASZ78_015382	A0A226MLR6	A0A226MFU5	Uncharacterized protein.	Uncharacterized protein.	0.997
ASZ78_006428	ASZ78_015686	A0A226MLR6	A0A226NN79	Uncharacterized protein.	IRS-type PTB domain-containing protein.	0.988
ASZ78_006753	ASZ78_004769	A0A226MHE0	A0A226MU66	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	Ig-like domain-containing protein.	0.784
ASZ78_006753	ASZ78_008138	A0A226MHE0	A0A226N5C1	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	Tyrosine-protein kinase receptor.	0.937
ASZ78_006753	ASZ78_009407	A0A226MHE0	A0A226MY86	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	0.826