STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASZ78_016267RNA_pol_L_2 domain-containing protein. (117 aa)    
Predicted Functional Partners:
ASZ78_004125
SHS2_Rpb7-N domain-containing protein.
   
 0.999
ASZ78_016135
TFIIS-type domain-containing protein.
   
 0.999
ASZ78_003169
Uncharacterized protein.
   
 0.999
ASZ78_009081
RPOLD domain-containing protein.
   
 0.999
ASZ78_007544
RPOL4c domain-containing protein.
   
 0.999
ASZ78_002474
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
ASZ78_014421
Uncharacterized protein.
   
 0.999
ASZ78_006282
Uncharacterized protein.
   
 0.999
ASZ78_010532
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.999
ASZ78_007881
Transcription elongation factor SPT5.
    
 0.996
Your Current Organism:
Callipepla squamata
NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail
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