STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASZ78_007289Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (411 aa)    
Predicted Functional Partners:
ASZ78_011895
Hist_deacetyl domain-containing protein.
  
  
0.999
ASZ78_008542
WD_REPEATS_REGION domain-containing protein.
   
 0.979
ASZ78_011889
WD_REPEATS_REGION domain-containing protein.
   
 0.979
ASZ78_012547
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.978
ASZ78_014618
HDAC_interact domain-containing protein.
   
 0.978
ASZ78_002014
Uncharacterized protein.
    
 0.973
ASZ78_014970
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.971
ASZ78_012441
DUF3452 domain-containing protein.
   
 0.969
ASZ78_012442
RB_A domain-containing protein.
   
 0.969
ASZ78_010620
HDAC_interact domain-containing protein.
   
 0.965
Your Current Organism:
Callipepla squamata
NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.