ASZ78_008592 protein (Callipepla squamata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASZ78_008592

C3H1-type domain-containing protein. (183 aa)

Predicted Functional Partners:

ASZ78_001737

0.985

ASZ78_006175

0.984

ASZ78_008739

0.982

ASZ78_015838

0.980

ASZ78_002018

0.977

ASZ78_002366

0.969

ASZ78_009179

0.969

ASZ78_002702

0.939

ASZ78_010712

0.937

ASZ78_005233

0.930

Your Current Organism:

Callipepla squamata

NCBI taxonomy Id: 9009
Other names: C. squamata, scaled quail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASZ78_001737	ASZ78_002018	A0A226N2I7	A0A226N9B1	RRM domain-containing protein.	RRM domain-containing protein.	0.934
ASZ78_001737	ASZ78_002366	A0A226N2I7	A0A226MPA9	RRM domain-containing protein.	SF3b1 domain-containing protein.	0.942
ASZ78_001737	ASZ78_002702	A0A226N2I7	A0A226NEH9	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.931
ASZ78_001737	ASZ78_005233	A0A226N2I7	A0A226MZM5	RRM domain-containing protein.	Uncharacterized protein.	0.746
ASZ78_001737	ASZ78_006175	A0A226N2I7	A0A226N2U0	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.949
ASZ78_001737	ASZ78_008592	A0A226N2I7	A0A226NEF2	RRM domain-containing protein.	C3H1-type domain-containing protein.	0.985
ASZ78_001737	ASZ78_008739	A0A226N2I7	A0A226NAN6	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.954
ASZ78_001737	ASZ78_009179	A0A226N2I7	A0A226MTY5	RRM domain-containing protein.	Uncharacterized protein.	0.974
ASZ78_001737	ASZ78_010712	A0A226N2I7	A0A226NIZ5	RRM domain-containing protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.928
ASZ78_001737	ASZ78_015838	A0A226N2I7	A0A226NIK0	RRM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.954
ASZ78_002018	ASZ78_001737	A0A226N9B1	A0A226N2I7	RRM domain-containing protein.	RRM domain-containing protein.	0.934
ASZ78_002018	ASZ78_002366	A0A226N9B1	A0A226MPA9	RRM domain-containing protein.	SF3b1 domain-containing protein.	0.978
ASZ78_002018	ASZ78_002702	A0A226N9B1	A0A226NEH9	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.997
ASZ78_002018	ASZ78_006175	A0A226N9B1	A0A226N2U0	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.997
ASZ78_002018	ASZ78_008592	A0A226N9B1	A0A226NEF2	RRM domain-containing protein.	C3H1-type domain-containing protein.	0.977
ASZ78_002018	ASZ78_008739	A0A226N9B1	A0A226NAN6	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.995
ASZ78_002018	ASZ78_009179	A0A226N9B1	A0A226MTY5	RRM domain-containing protein.	Uncharacterized protein.	0.695
ASZ78_002018	ASZ78_010712	A0A226N9B1	A0A226NIZ5	RRM domain-containing protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.966
ASZ78_002018	ASZ78_015838	A0A226N9B1	A0A226NIK0	RRM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
ASZ78_002366	ASZ78_001737	A0A226MPA9	A0A226N2I7	SF3b1 domain-containing protein.	RRM domain-containing protein.	0.942