Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFV71952.1FIG00602320: hypothetical protein. (568 aa)    
Predicted Functional Partners:
SFV71953.1
FIG00604520: hypothetical protein.
 
     0.945
SFV71949.1
Virion morphogenesis protein.
 
     0.860
SFV71945.1
Phage protein.
 
     0.837
SFV71960.1
Baseplate assembly protein, putative.
 
     0.836
SFV72347.1
FIG00604520: hypothetical protein.
 
     0.781
SFV72354.1
Baseplate assembly protein, putative.
 
     0.776
SFV71951.1
Hypothetical protein.
       0.775
SFV71950.1
Hypothetical protein.
       0.764
SFV71955.1
Phage tape measure.
 
     0.745
SFV71948.1
FIG00605013: hypothetical protein.
       0.743
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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