STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV71955.1Phage tape measure. (1097 aa)    
Predicted Functional Partners:
SFV71960.1
Baseplate assembly protein, putative.
 
     0.879
SFV71957.1
FIG00603028: hypothetical protein.
  
    0.832
SFV71949.1
Virion morphogenesis protein.
 
    0.819
SFV71956.1
FIG00602978: hypothetical protein.
       0.779
SFV71953.1
FIG00604520: hypothetical protein.
 
     0.776
SFV71958.1
Baseplate assembly protein, putative.
       0.776
SFV71952.1
FIG00602320: hypothetical protein.
 
     0.746
SFV72343.1
Virion morphogenesis protein.
 
    0.744
SFV72075.1
Virion morphogenesis protein.
 
    0.701
SFV71927.1
Bacteriophage transposase A protein, putative.
  
   
 0.695
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.