STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV71981.1Vitamin B12 ABC transporter, B12-binding component BtuF. (315 aa)    
Predicted Functional Partners:
SFV71979.1
Vitamin B12 ABC transporter, permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.996
SFV71980.1
Vitamin B12 ABC transporter, ATPase component BtuD.
 
 
 0.988
SFV73228.1
Hypothetical protein.
  
 
 0.901
SFV73797.1
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria.
 
    0.653
SFV71978.1
Hypothetical protein.
       0.555
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.500
cobA
Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase.
     
 0.475
SFV72782.1
Capsular polysaccharide biosynthesis fatty acid synthase WcbR.
  
 
 0.461
SFV73976.1
FIG00604257: hypothetical protein.
  
 
 0.445
cbiE
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit; Cobalt-precorrin-6y C5-methyltransferase / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating].
     
 0.441
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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