Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFV71986.1 | SFV71987.1 | DESPIGER_0083 | DESPIGER_0084 | FIG00603999: hypothetical protein. | Serine--glyoxylate aminotransferase. | 0.584 |
SFV71986.1 | SFV71988.1 | DESPIGER_0083 | DESPIGER_0085 | FIG00603999: hypothetical protein. | LSU m5C1962 methyltransferase RlmI. | 0.514 |
SFV71986.1 | argC | DESPIGER_0083 | DESPIGER_0082 | FIG00603999: hypothetical protein. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.779 |
SFV71986.1 | hypD | DESPIGER_0083 | DESPIGER_0081 | FIG00603999: hypothetical protein. | [NiFe] hydrogenase metallocenter assembly protein HypD; Belongs to the HypD family. | 0.746 |
SFV71987.1 | SFV71986.1 | DESPIGER_0084 | DESPIGER_0083 | Serine--glyoxylate aminotransferase. | FIG00603999: hypothetical protein. | 0.584 |
SFV71987.1 | SFV71988.1 | DESPIGER_0084 | DESPIGER_0085 | Serine--glyoxylate aminotransferase. | LSU m5C1962 methyltransferase RlmI. | 0.732 |
SFV71987.1 | SFV72241.1 | DESPIGER_0084 | DESPIGER_0350 | Serine--glyoxylate aminotransferase. | Glutamate synthase [NADPH] large chain. | 0.494 |
SFV71987.1 | alaS | DESPIGER_0084 | DESPIGER_1621 | Serine--glyoxylate aminotransferase. | Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.574 |
SFV71987.1 | argC | DESPIGER_0084 | DESPIGER_0082 | Serine--glyoxylate aminotransferase. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.577 |
SFV71987.1 | fabG | DESPIGER_0084 | DESPIGER_1070 | Serine--glyoxylate aminotransferase. | 3-oxoacyl-[acyl-carrier protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.547 |
SFV71987.1 | hypD | DESPIGER_0084 | DESPIGER_0081 | Serine--glyoxylate aminotransferase. | [NiFe] hydrogenase metallocenter assembly protein HypD; Belongs to the HypD family. | 0.535 |
SFV71987.1 | metG | DESPIGER_0084 | DESPIGER_0305 | Serine--glyoxylate aminotransferase. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.475 |
SFV71987.1 | pdxB | DESPIGER_0084 | DESPIGER_1468 | Serine--glyoxylate aminotransferase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.415 |
SFV71987.1 | purD | DESPIGER_0084 | DESPIGER_1770 | Serine--glyoxylate aminotransferase. | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | 0.570 |
SFV71988.1 | SFV71986.1 | DESPIGER_0085 | DESPIGER_0083 | LSU m5C1962 methyltransferase RlmI. | FIG00603999: hypothetical protein. | 0.514 |
SFV71988.1 | SFV71987.1 | DESPIGER_0085 | DESPIGER_0084 | LSU m5C1962 methyltransferase RlmI. | Serine--glyoxylate aminotransferase. | 0.732 |
SFV71988.1 | argC | DESPIGER_0085 | DESPIGER_0082 | LSU m5C1962 methyltransferase RlmI. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.523 |
SFV71988.1 | hypD | DESPIGER_0085 | DESPIGER_0081 | LSU m5C1962 methyltransferase RlmI. | [NiFe] hydrogenase metallocenter assembly protein HypD; Belongs to the HypD family. | 0.505 |
SFV72241.1 | SFV71987.1 | DESPIGER_0350 | DESPIGER_0084 | Glutamate synthase [NADPH] large chain. | Serine--glyoxylate aminotransferase. | 0.494 |
SFV72241.1 | argC | DESPIGER_0350 | DESPIGER_0082 | Glutamate synthase [NADPH] large chain. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.657 |
page 1 of 2