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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72082.1ATP-dependent Clp protease proteolytic subunit. (663 aa)    
Predicted Functional Partners:
SFV72084.1
FIG003269: Prophage tail protein.
 
    0.943
SFV72083.1
Phage tail/DNA circulation protein.
 
     0.940
SFV72085.1
Prophage baseplate assembly protein V.
 
     0.872
SFV72078.1
Bacteriophage tail sheath protein.
 
    0.870
SFV72086.1
Bacteriophage protein GP46.
 
     0.851
SFV72088.1
FIG121501: Prophage tail protein.
 
     0.842
SFV72075.1
Virion morphogenesis protein.
 
    0.805
SFV72087.1
Phage FluMu protein gp47.
 
     0.791
SFV72065.1
Mu-like phage gp27.
 
     0.761
SFV72069.1
Phage (Mu-like) virion morphogenesis protein.
 
    0.752
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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