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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72103.1FIG00603565: hypothetical protein. (87 aa)    
Predicted Functional Partners:
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
   
    0.708
SFV72500.1
FIG00605471: hypothetical protein.
  
     0.668
SFV72483.1
DNA topoisomerase IV subunit A.
  
     0.662
SFV72499.1
FIG00604054: hypothetical protein.
  
     0.606
SFV72102.1
Succinyl-diaminopimelate desuccinylase.
 
     0.603
SFV73139.1
Molybdenum cofactor biosynthesis protein MoaE.
  
     0.575
SFV73602.1
FIG00602706: hypothetical protein.
  
     0.566
secG
Preprotein translocase subunit SecG (TC 3.A.5.1.1); Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
    0.559
SFV73871.1
ATP synthase protein I.
  
     0.517
rplM
LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
    0.516
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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