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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72133.1Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (245 aa)    
Predicted Functional Partners:
SFV72134.1
FIG00602955: hypothetical protein.
       0.789
SFV72132.1
ATPase, AAA family.
       0.784
SFV72131.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.782
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
  
 0.669
SFV72136.1
FIG00603395: hypothetical protein.
  
    0.633
SFV72137.1
Rod shape-determining protein MreB.
  
    0.590
SFV72135.1
Hypothetical protein.
       0.572
SFV71973.1
Ribonuclease E.
  
   
 0.497
SFV72918.1
Protein YicC.
 
     0.451
SFV72847.1
Multi-sensor hybrid histidine kinase.
     
 0.434
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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