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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72146.1Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase. (645 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase MsrB / Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.950
SFV72480.1
Thioredoxin family protein.
  
 
 0.892
SFV73701.1
Periplasmic thiol:disulfide interchange protein DsbA.
 
 
 0.859
SFV73351.1
Redox-active disulfide protein 2.
  
 
 0.761
SFV73991.1
FIG00604570: hypothetical protein.
  
 
 0.695
SFV72579.1
FIG00605441: hypothetical protein.
  
     0.500
SFV72943.1
FIG00602270: hypothetical protein.
 
     0.460
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
   
 0.437
SFV73781.1
Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.429
SFV73180.1
FIG00605539: hypothetical protein.
  
     0.424
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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