STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72164.1Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase alpha subunit. (270 aa)    
Predicted Functional Partners:
SFV72165.1
Fumarate hydratase class I, aerobic.
 
 
 0.994
SFV73201.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase beta subunit.
 
 
 0.986
SFV73200.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase alpha subunit.
  
  
 
0.928
SFV73816.1
NADP-dependent malic enzyme.
  
 
 0.916
argH
Argininosuccinate lyase.
    
  0.806
SFV72617.1
Formate dehydrogenase, beta subunit, putative.
     
  0.800
SFV72618.1
Formate dehydrogenase O alpha subunit @ selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.800
SFV73128.1
Conserved hypothetical protein.
     
  0.800
SFV73540.1
Biosynthetic Aromatic amino acid aminotransferase alpha @ Aspartate aminotransferase.
     
  0.800
SFV73659.1
Aspartate aminotransferase.
     
  0.800
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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