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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72208.1HlyD family secretion protein. (476 aa)    
Predicted Functional Partners:
SFV72209.1
Type I secretion system ATPase.
  
 0.956
SFV72703.1
Type I secretion system ATPase, LssB family LapB.
 
 0.911
SFV72704.1
Agglutination protein.
 
 
 0.858
SFV72206.1
Outer membrane efflux protein.
  
 
 0.835
SFV72207.1
Hypothetical protein.
       0.773
SFV72203.1
Teichoic acid export ATP-binding protein TagH.
 
     0.696
SFV72204.1
O-antigen export system permease protein RfbD.
 
     0.669
SFV73266.1
Phospholipid-lipopolysaccharide ABC transporter.
  
 
 0.669
SFV72705.1
Conserved hypothetical protein.
 
  
 0.642
SFV72826.1
Alkaline phosphatase.
 
  
 0.642
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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