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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72216.1Glucose-1-phosphate thymidylyltransferase. (298 aa)    
Predicted Functional Partners:
SFV72215.1
dTDP-glucose 4,6-dehydratase.
 
 
 0.997
SFV72217.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
 0.995
SFV72218.1
dTDP-4-dehydrorhamnose reductase.
 
  
 0.971
galU
UTP--glucose-1-phosphate uridylyltransferase.
  
 
0.918
SFV72497.1
Phosphoglucomutase.
    
 0.910
SFV72548.1
UDP-glucose dehydrogenase.
  
  
 0.900
SFV72792.1
UDP-galactopyranose mutase.
  
  
 0.877
SFV74240.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.875
rfbF
Glucose-1-phosphate cytidylyltransferase.
  
  
 0.759
SFV74147.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.757
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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