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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72261.1DNA-DAMAGE-INDUCIBLE PROTEIN. (453 aa)    
Predicted Functional Partners:
SFV72260.1
Succinate dehydrogenase subunit.
 
     0.809
SFV72265.1
Nickel transport system permease protein NikB (TC 3.A.1.5.3).
 
     0.761
SFV72264.1
Nickel transport system permease protein NikC (TC 3.A.1.5.3).
 
    0.760
SFV72262.1
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3).
       0.740
SFV72263.1
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3).
  
    0.731
nikA
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
     0.700
SFV72259.1
Regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
    0.623
SFV72258.1
FIG00602727: hypothetical protein.
       0.556
nikA-2
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
     0.442
SFV72267.1
Hypothetical protein.
       0.404
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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