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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72263.1Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3). (278 aa)    
Predicted Functional Partners:
SFV72264.1
Nickel transport system permease protein NikC (TC 3.A.1.5.3).
 
 0.998
SFV72265.1
Nickel transport system permease protein NikB (TC 3.A.1.5.3).
 
 0.996
SFV74318.1
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
 
 0.996
SFV72502.1
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
  
 0.986
nikA
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
 
 0.984
SFV74317.1
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2).
 
 0.974
nikA-2
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
 
 0.917
SFV74319.1
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1).
  
  
 
0.908
SFV72530.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
    
0.882
SFV72501.1
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 
 
 0.874
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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