Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFV72264.1Nickel transport system permease protein NikC (TC 3.A.1.5.3). (274 aa)    
Predicted Functional Partners:
SFV72263.1
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3).
 0.998
SFV72265.1
Nickel transport system permease protein NikB (TC 3.A.1.5.3).
 0.998
SFV72262.1
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3).
 
 0.996
nikA
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
 0.994
SFV74319.1
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1).
 0.990
SFV74317.1
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2).
 0.984
SFV74320.1
OLIGOPEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN.
 
 0.982
nikA-2
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
 0.975
SFV74204.1
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily.
 
 0.973
SFV73071.1
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily.
 
 0.958
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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