close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72293.1Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG). (651 aa)    
Predicted Functional Partners:
SFV72299.1
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ).
 
 
 0.983
epaR
Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components).
 
 
 0.960
SFV72279.1
Flagellar biosynthesis protein FliQ.
 
 
 0.946
SFV72294.1
Type III secretion inner membrane protein (YscD,homologous to flagellar export components).
  
  
 0.914
epaO
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components).
 
  
 0.911
SFV72289.1
Type III secretion chaperone protein for YopD (SycD).
 
  
 0.894
SFV72280.1
Flagellar biosynthesis protein FlhA.
 
 
 0.890
epaP
Type III secretion apparatus protein, YscR/HrcR family; Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components).
 
 
 0.887
SFV72284.1
Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA).
 
  
 0.876
SFV72301.1
Type III secretion cytoplasmic protein (YscL).
 
  
 0.799
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.