Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SFV72304.1HpaP protein; Type III secretion protein (YscP). (212 aa)    
Predicted Functional Partners:
SFV72303.1
Type III secretion spans bacterial envelope protein (YscO).
       0.639
epaO
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components).
       0.589
epaP
Type III secretion apparatus protein, YscR/HrcR family; Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components).
       0.589
SFV72307.1
Anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV.
       0.544
SFV72300.1
FIG00606188: hypothetical protein.
       0.536
SFV72301.1
Type III secretion cytoplasmic protein (YscL).
       0.536
SFV72302.1
Flagellum-specific ATP synthase FliI.
       0.536
SFV72299.1
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ).
       0.530
SFV72308.1
Serine-protein kinase RsbW.
       0.479
SFV72309.1
Membrane-bound lytic murein transglycosylase D precursor.
       0.473
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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