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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72307.1Anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV. (112 aa)    
Predicted Functional Partners:
SFV72308.1
Serine-protein kinase RsbW.
 
 
 0.997
SFV72275.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.975
SFV72847.1
Multi-sensor hybrid histidine kinase.
  
  
 0.970
epaO
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components).
  
   0.905
SFV73706.1
Multi-sensor hybrid histidine kinase.
 
  
 0.842
SFV74354.1
Sensor histidine kinase/response regulator.
  
  
 0.819
SFV72390.1
Flagellar motor switch protein FliG.
  
   0.815
SFV73068.1
Mce related protein.
  
   0.801
epaP
Type III secretion apparatus protein, YscR/HrcR family; Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components).
  
    0.779
SFV72309.1
Membrane-bound lytic murein transglycosylase D precursor.
 
     0.751
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.