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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72369.1Lipoprotein, NLP/P60 family. (453 aa)    
Predicted Functional Partners:
SFV72370.1
FIG00602245: hypothetical protein.
 
     0.834
coaE
Ribosomal large subunit pseudouridine synthase D; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.812
SFV72371.1
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog.
 
     0.778
SFV72367.1
Cys-tRNA(Pro) deacylase YbaK; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.642
SFV72372.1
Hypothetical protein.
       0.550
SFV72943.1
FIG00602270: hypothetical protein.
 
     0.474
SFV74077.1
FIG00607242: hypothetical protein.
  
     0.467
SFV72579.1
FIG00605441: hypothetical protein.
  
     0.450
SFV73355.1
Membrane-bound lytic murein transglycosylase D precursor.
 
  
 0.439
SFV72914.1
FIG00604374: hypothetical protein.
 
      0.435
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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