Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
SFV72387.1Exonuclease. (173 aa)    
Predicted Functional Partners:
SFV74233.1
DNA polymerase III alpha subunit.
   
 0.988
dnaN
DNA polymerase III beta subunit.
   
 0.979
dnaX
DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.977
SFV72943.1
FIG00602270: hypothetical protein.
    
 0.946
SFV73857.1
DNA polymerase III delta prime subunit.
    
 0.932
SFV72386.1
Hypothetical protein.
       0.775
polA
DNA polymerase I.
  
  
 0.563
SFV72388.1
IAA acetyltransferase.
  
    0.504
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.496
SFV72389.1
Hypothetical protein.
       0.484
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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