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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72387.1Exonuclease. (173 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III beta subunit.
  
 0.985
SFV74233.1
DNA polymerase III alpha subunit.
   
 0.985
dnaX
DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.981
SFV72943.1
FIG00602270: hypothetical protein.
    
 0.962
SFV73857.1
DNA polymerase III delta prime subunit.
   
 0.927
SFV72386.1
Hypothetical protein.
       0.776
polA
DNA polymerase I.
  
 
 0.528
SFV74131.1
Werner syndrome helicase homolog.
   
 
 0.519
SFV72388.1
IAA acetyltransferase.
  
    0.504
SFV72389.1
Hypothetical protein.
       0.484
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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