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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72565.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
SFV72566.1
Cob(I)alamin adenosyltransferase.
       0.648
SFV72564.1
Tricarboxylate transport protein TctC.
       0.570
SFV72563.1
Tricarboxylate transport membrane protein TctA.
       0.521
SFV72562.1
Hypothetical protein.
       0.514
msrA
Peptide methionine sulfoxide reductase MsrB / Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.453
SFV72128.1
FOG: GGDEF domain.
   
  
 0.449
SFV72817.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
   
  
 0.449
SFV74395.1
Catalase; Belongs to the catalase family.
  
  
 0.448
SFV72136.1
FIG00603395: hypothetical protein.
   
    0.436
SFV73896.1
Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.436
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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