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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
furPeroxide stress regulator PerR, FUR family; Belongs to the Fur family. (133 aa)    
Predicted Functional Partners:
SFV72611.1
Rubredoxin.
  
  
 0.809
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.630
SFV72613.1
D-glycerate 2-kinase.
       0.563
SFV74211.1
Rubrerythrin.
  
  
 0.563
SFV72847.1
Multi-sensor hybrid histidine kinase.
  
 
 0.552
rbr
Rubrerythrin.
  
  
 0.545
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.524
SFV72130.1
Hypothetical protein.
  
    0.523
SFV73138.1
FIG00602983: hypothetical protein.
  
    0.521
SFV72609.1
Trk system potassium uptake protein TrkA.
 
    0.476
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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