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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72617.1Formate dehydrogenase, beta subunit, putative. (219 aa)    
Predicted Functional Partners:
SFV72618.1
Formate dehydrogenase O alpha subunit @ selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.997
cooF
CO dehydrogenase iron-sulfur protein CooF.
 
  
 0.974
SFV73980.1
Iron-sulfur cluster-binding protein.
  
  
 
0.928
SFV72614.1
Molybdopterin biosynthesis protein MoeA.
    
 0.927
SFV73128.1
Conserved hypothetical protein.
  
  
 
0.927
SFV72602.1
Formate dehydrogenase-O, major subunit.
    
 0.913
SFV72616.1
Formate dehydrogenase formation protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
  
 0.903
SFV73129.1
Ni/Fe-hydrogenase 2 B-type cytochrome subunit.
 
 0.879
SFV72119.1
Thiosulfate reductase precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.837
SFV72164.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase alpha subunit.
     
  0.800
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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