close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72729.1TRAP-type C4-dicarboxylate transport system, small permease component. (198 aa)    
Predicted Functional Partners:
SFV72728.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.943
SFV72730.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.874
SFV73430.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.694
SFV73429.1
TRAP transporter solute receptor, unknown substrate 6.
 
  
 0.686
SFV72425.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.668
SFV73642.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.647
SFV73643.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.639
SFV72427.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.539
SFV72025.1
Hypothetical protein.
  
     0.495
SFV73618.1
Plasmid recombination, MobE mobilization protein.
  
     0.473
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.